BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016D04SP1|AL426999
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig556 1604 0.0
>3x_Contig556
Length = 2531
Score = 1604 bits (807), Expect = 0.0
Identities = 832/841 (98%), Gaps = 2/841 (0%)
Strand = Plus / Minus
Query: 114 ttcttataacatcatcctgatatttatwatatcgtgcggaaatccaggactataaaaccg 173
|||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2531 ttcttatacnatcatcntgatatttataatatcgtgcggaaatccaggactataaaaccg 2472
Query: 174 tgttgcttcgttgcgattttttatttgcatgcaagcgtcaagtccatcggagagatcaat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 tgttgcttcgttgcgattttttatttgcatgcaagcgtcaagtccatcggagagatcaat 2412
Query: 234 atcgttcatcttagcgccctttctgttgaataaattgggaaaagcctagcttcttctcac 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 atcgttcatcttagcgccctttctgttgaataaattgggaaaagcctagcttcttctcac 2352
Query: 294 cacatacaatggagggctggtagatcggatatcctattcaattcattttaaatcacttat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 cacatacaatggagggctggtagatcggatatcctattcaattcattttaaatcacttat 2292
Query: 354 gctcatcactgtagacttttgataaatgttctaatttgtttccaacattttaaaatatat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 gctcatcactgtagacttttgataaatgttctaatttgtttccaacattttaaaatatat 2232
Query: 414 aaatgatgttacttatttacttgtatggtaaggttacttgaggtctaacccaatcaactg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 aaatgatgttacttatttacttgtatggtaaggttacttgaggtctaacccaatcaactg 2172
Query: 474 agctgttatgaatttcattcatatgctaatatgttattggataaaggaagcctttcaaat 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 agctgttatgaatttcattcatatgctaatatgttattggataaaggaagcctttcaaat 2112
Query: 534 cagaattgaaagatgtcattcattcagcatttcagtgacgaggtagtttcgctccagtat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 cagaattgaaagatgtcattcattcagcatttcagtgacgaggtagtttcgctccagtat 2052
Query: 594 tcttttcgctttgaataataactaggtgaacaaaattggccaatgcaacttcagttgaag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 tcttttcgctttgaataataactaggtgaacaaaattggccaatgcaacttcagttgaag 1992
Query: 654 tgtgcaaagcatggatgatatagtatcatgtgaataaatcaagcttaaattgtaaaaagt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 tgtgcaaagcatggatgatatagtatcatgtgaataaatcaagcttaaattgtaaaaagt 1932
Query: 714 ctatcgtttttcccagcatatgaagtttcggttgttaagttttcaaaaattaaataaatg 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 ctatcgtttttcccagcatatgaagtttcggttgttaagttttcaaaaattaaataaatg 1872
Query: 774 acagtgagccatgttttataatagtgcgtaagatattctgatgaaatatcgatgatcaac 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 acagtgagccatgttttataatagtgcgtaagatattctgatgaaatatcgatgatcaac 1812
Query: 834 tctgattggatggataaaaatdatgtaaaggcaaagtaaaagagactgataccagggaaa 893
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 tctgattggatggataaaaataatgtaaaggcaaagtaaaagagactgataccagggaaa 1752
Query: 894 tatgagaggdtcgggagtccttcgtgaatw-tttcatattggcggtat-aactcggaaaa 951
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1751 tatgagaggatcgggagtccttcgtgaatactttcatattggcggtataaactcggaaaa 1692
Query: 952 a 952
|
Sbjct: 1691 a 1691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9221
Number of Sequences: 1807
Number of extensions: 9221
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)